PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g12460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 430aa    MW: 48813.9 Da    PI: 4.8742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g12460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383.1e-12225276155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Vradi11g12460.1 225 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 276
                      79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-13223279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-12223280No hitNo description
PROSITE profilePS5088815.428224275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16224290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9225276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9230281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00382355419No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEKDHNYSAP LSMPPSFNTL DYSLDHDQNH LYPPNHHQQQ LMKFQASADQ NNNGSMVDYM  60
PQTPPTPPPP HGFYAASNTA TISYDKLSFA DVMQFADFGP KLALNQTKSC EESGLDPVYF  120
LKFPVLNDKM EEEQTLMVNE DPDGEAENHD ERFNLVDVEE KSRVGEEGMM MREDEETRLS  180
DDNNNSVQIR FLGQEETQKN AGVQENKNKR KRPRTVKTSE EVESQRMTHI AVERNRRKQM  240
NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRV LGEAQARQVG  300
EPSIAQQQPP FFPPLAIPNE QMKLVELESG LREETAESKS CLADVEVKLL GFDAMIKILS  360
RRRPGQLIKT IAALEDLQLI ILHTNITTIE QTVLYSFNVK VASDSRFTAE DIASSVQQIF  420
NFIHANTSM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225236RMTHIAVERNRR
2285289KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520029.10.0PREDICTED: transcription factor FAMA isoform X1
SwissprotQ56YJ81e-149FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0L9UTH60.0A0A0L9UTH6_PHAAN; Uncharacterized protein
STRINGGLYMA01G23230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104893340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-136bHLH family protein